Compiling FVCOM for serial run
On Fx10, you will use Fujitsu compilers. The following setting in makefile will work.
IOLIBS = -L/usr/local/netCDF/4.1.1/lib -lnetcdf
IOINCS = -I/usr/local/netCDF/4.1.1/include
CPP = /usr/bin/cpp
FC = frtpx # in login mode, = frt in interactive job mode
OPT = -Kfast
# in case of automatic parallel mode,
# use -Kfast,parallel (no space before and after the comma)
Running serial FVCOM on Interactive Job Mode
First you need to enter an interactive job mode. There is limitation of elapsed time of 2 hours on 1 node for using the interactive job mode. So if you like to execute longer job, you need to use batch job mode.
$ ./fvcom tst
$ exit # End of interactive job and back to login node
Running serial FVCOM on Batch Job Mode
Prepare a job script referring to the following examples:
#PJM -L ”rscgrp=short”
#PJM -L ”node=1”
#PJM -L ”elapse=1:00:00”
Then submit this job on login node and check the job status as follows:
$ pjstat # check your job status
Standard outputs will be stored in serial.sh.o****** where ****** is a unique number.