April 30, 2018
Build makedepf90 on ITO Subsystem-A
This page is a memorandum for building makedepf90 with Intel compiler on Subsystem-A of Supercomputer ITO (ITO-A) at Kyushu University, which is used in building FVCOM. Obtaining source code Source code can be downloaded from Github by clicking on the green button of Clone or download at the right-hand side. Copy it in a directory, e.g., ~/src/. Then set environmental variables for Intel compilers as introduced in this page. Extract the source code, build it, and copy the created executable file of makedepf90 to, e.g., ~/local/bin that is added to PATH. unzip makedepf90.zip cd makedepf90-master make cp makedepf90 ~/local/bin Usage When makedepends for FVCOM needs to be recreated, move to […]
Build netcdf-3.6.3-intel on ITO Subsystem-A
This is a memorandum building netcdf-3.6.3 with Intel compilers on Supercomputer ITO Subsystem-A at Kyushu University. The build of netcdf-4.1.2 does not work as found here. Obtaining source of netcdf-3.6.3 Updated on June 13, 2021: The source of netcdf-3.6.3.tar.gz cannot be downloaded now. Suppose you have it. Building netcdf-3.6.3 Create the following bash script of build_netcdf363.sh. #!/bin/bash # build_netcdf363.sh export CC=icc export CXX=icpc export CFLAGS=-O3 export CXXFLAGS=-O3 export F77=ifort export FC=ifort export F90=ifort export FFLAGS=-O3 export CPP='icc -E' export CXXCPP='icpc -E' tar xf netcdf-3.6.3.tar.gz cd netcdf-3.6.3 ./configure --prefix=/home/usr1/account/local/netcdf-3.6.3-intel make make check make install Adding an executable attribute and execute the script. chmod a+x build_netcdf363.sh ./build_netdf363.sh Done! If you use it […]
Build FVCOM4.1 (Series) on ITO Subsystem-A using Intel Compilers
This is a memorandum of how to build and execute FVCOM 4.1 in series (non MPI) using Intel compilers on Supercomputer ITO Subsystem A at Kyushu University. Suppose the source code exists in [cci]FVCOM4.1/FVCOM_source[/cci], and [cci]FVCOM4.1/Examples/Estuary[/cci] is a selected test case. Installing nkf Line feed of some distributed source files is for Windows and need to be fixed using nkf. For installing nkf, download the source of [cci]nkf[/cci] from this site , copy it to [cci] ~/src [/cci], and extract and build it. [cc lang='bash'] $ tar xf nkf-2.1.4.tar.gz $ cd nkf-2.1.4 $ make ### Create ~/local/bin and add its PATH $ cp nkf ~/local/bin/ [/cc] Check line feed of […]