May 2018

Computing
Install Intel Parallel Studio XE 2018 Composer on WSL Ubuntu on Windows10

I installed Inte Parallel Studio XE 2018 Composer on WSL Ubuntu on Windows 10. In November, 2017, I tried to install it as posted here (in Japanese), it was not successful. This time I successfully installed it on Windows 10 ver. 1803 issued in April, 2018. Installation Download [cci]Version 2018 (Update 2) March 21, 2018[/cci] from the license administration server in here and save it in an appropriate directory and extract it. Move to the extracted directory and invoke [cci]install_sh[/cci]. [cc lang="bash"] $ tar xf parallel_studio_xe_2018_update2_composer_edition_online.tgz $ cd parallel_studio_xe_2018_update2_composer_edition_online $ sudo ./install.sh [/cc] Just follow the instruction. Basically the default values are fine. After completing the installation, invoke a tool […]

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Computing
Upgrade Ubuntu on WSL on Windows10

Windows10 was upgraded to 1803 at the end of April 2018. It seems that Windows Sybsystem for Linux (WSL) has been enhanced, and we will also upgrade WSL's Unbutu to the latest version. Confirm version Start up Ubuntu terminal and check the version. [cc] $ uname -a Linux T470-S 4.4.0-17134-Microsoft #1-Microsoft Tue Apr 10 18:04:00 PST 2018 x86_64 x86_64 x86_64 GNU/Linux [/cc] [cc] $ lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 16.04.3 LTS Release: 16.04 Codename: xenial [/cc] Local cache update Update the local cache of the installed packages. In my environment, this setting prompted me to enter root's password. [cc] $ sudo apt update […]

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Computing
DEM and Coastline data

DEM Digital Elevation Model ASTER GDEM 30 m DEM SRTM at CGIAR-CSI 90 m DEM and re-sampled 250 m, 500 m, and 1km DEM Coastline Data NOAA GEODASS NOAA's online coastline extractor is no longer recommended to use. Instead, download GSHHG in binary file and manipulate it on a software geodas-ng. Also GEODASS coastlines may be downloaded and processed using geodas-ng. geodas-ng can draw a map of specified lon & lat ranges and then export it in a various file format, including GMT text format and ESRI shape file format.

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Computing
Build FVCOM4.1 (MPI) on ITO Subsystem-A using Intel Compilers

This page is a memorandum of building and executing [cci]FVCOM4.1[/cci] in [cci]MPI[/cci] using Intel compilers on the supercomputer Subsystem-A of ITO at Kyushu University. Those in [cci]Series[/cci] are introduced in this page. The building environment for [cci]Series[/cci] should be prepared. The source files are supposed to exist in [cci]FVCOM4.1/FVCOM_source[/cci] and the test case is [cci]Estuary[/cci] in [cci]FVCOM4.1/Examples/Estuary[/cci]. Preparation for METIS METIS library requires to be installed for building for MPI. First [cci]load[/cci] Intel compilers: [cc] $ module load intel/2018 [/cc] Environmental variables for Intel C compiler should be made as follows: [cc] $ export CC=icc $ export CPP="icc -E" [/cc] Move to the directory of [cci]FVCOM4.1/METIS_source[/cci] where the [cci]METIS[/cci] source […]

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